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Did the DXF plot option work?
This is the best option at the moment until the PCB API is created and we can create genuine plugins for this kind of job.
You can use FreeCAD:
1) Export PCB to IDF
2) Import the IDF in FreeCAD
3) Use draft Shape2DView to project the board with holes
4) Export DXF
If your laser cutter can work with gcode, I can introduce an inkscape plugin that will convert the gerber paste layer to gcode. It works fine down to 0.8mm pitch components, probably smaller with a bit more experimenting. Just use Kicad to reduce the aper
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